Interfaculty Bioinformatics Unit

Differential chromatin accessibility analysis

We use ATAC-seq data to identify differentially accessible chromatin regions between experimental groups. Our workflow relies on the nf-core atacseq pipeline.

  • Documentation (dowload below)
  • Materials & methods
  • Quality reports

 

Differential chromatin accessibility (DA) analysis

  • Table with DA results for each pairwise comparison of experimental groups
  • Table with gene annotation for the peaks
  • Figure showing peak overlap between samples

 

A zip archive containing the results from an example analysis based on a published dataset can be downloaded below. Please refer to the included README and the documentation for more details.